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Data Integration, Manipulation and Visualization of Phylogenetic Trees de Guangchuang Yu

Data Integration, Manipulation and Visualization of Phylogenetic Trees: Chapman & Hall/CRC Computational Biology Series

Autor Guangchuang Yu
en Limba Engleză Paperback – 26 aug 2024
Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. Using the most comprehensive packages for phylogenetic data integration and visualization, contains numerous examples that can be used for teaching and learning. Ideal for undergraduate readers and researchers with a working knowledge of R and ggplot2.
Key Features:
  • Manipulating phylogenetic tree with associated data using tidy verbs
  • Integrating phylogenetic data from diverse sources
  • Visualizing phylogenetic data using grammar of graphics
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Specificații

ISBN-13: 9781032245546
ISBN-10: 1032245549
Pagini: 276
Ilustrații: 234
Dimensiuni: 178 x 254 x 19 mm
Greutate: 0.51 kg
Ediția:1
Editura: CRC Press
Colecția Chapman and Hall/CRC
Seria Chapman & Hall/CRC Computational Biology Series

Locul publicării:Boca Raton, United States

Notă biografică

Guangchuang Yu is a professor of bioinformatics, director of the Department of Bioinformatics, Southern Medical University. He earned his Ph.D. from the School of Public Health, The University of Hong Kong. As an active R user, he has authored several R packages and has supervised post-graduate students to develop a few other packages, including ggmsa, ggtreeExtra, MicrobiomeProfiler and MicrobiotaProcess.

Cuprins

1. Importing Tree with Data, 2. Manipulating Tree with Data, 3. Exporting tree with data, 4. Phylogenetic Tree Visualization, 5. Phylogenetic Tree Annotation, 6. Visual Exploration of Phylogenetic Tree, 7. Plotting tree with data, 8. Annotating Tree with Silhouette Images and Sub-plots, 9. ggtree for other tree-like objects, 10. ggtreeExtra for presenting data on a circular layout, 11. Other ggtree extensions, 12. ggtree utilities, A. Frequently asked questions, B. Related tools, Figures and Tables Publications of the ggtree package suite, References, Index

Descriere

This book introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra.