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Computational Methods for Protein Structure Prediction and Modeling: Volume 2: Structure Prediction: Biological and Medical Physics, Biomedical Engineering

Editat de Ying Xu, Dong Xu, Jie Liang
en Limba Engleză Hardback – 15 dec 2006
An ultimate goal of modern biology is to understand how the genetic blueprint of cells(genotype)determinesthestructure,function,andbehaviorofalivingorganism (phenotype). At the center of this scienti?c endeavor is characterizing the bioch- ical and cellular roles of proteins, the working molecules of the machinery of life. A key to understanding of functional proteins is the knowledge of their folded str- tures in a cell, as the structures provide the basis for studying proteins’ functions and functional mechanisms at the molecular level. Researchers working on structure determination have traditionally selected - dividual proteins due to their functional importance in a biological process or pa- way of particular interest. Major research organizations often have their own protein X-ray crystallographic or/and nuclear magnetic resonance facilities for structure - termination, which have been conducted at a rate of a few to dozens of structures a year. Realizing the widening gap between the rates of protein identi?cation (through DNA sequencing and identi?cation of potential genes through bioinformatics an- ysis) and the determination of protein structures, a number of large scienti?c init- tives have been launched in the past few years by government funding agencies in the United States, Europe, and Japan, with the intention to solve protein structures en masse, an effort called structural genomics. A number of structural genomics centers (factory-like facilities) have been established that promise to produce solved protein structures in a similar fashion to DNA sequencing.
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Specificații

ISBN-13: 9780387333212
ISBN-10: 0387333215
Pagini: 320
Ilustrații: XX, 322 p. 41 illus.
Dimensiuni: 155 x 235 x 21 mm
Greutate: 0.61 kg
Ediția:2007
Editura: Springer
Colecția Springer
Seria Biological and Medical Physics, Biomedical Engineering

Locul publicării:New York, NY, United States

Public țintă

Research

Cuprins

Protein Structure Prediction by Protein Threading.- De Novo Protein Structure Prediction.- Structure Prediction of Membrane Proteins.- Structure Prediction of Protein Complexes.- Structure-Based Drug Design.- Protein Structure Prediction as a Systems Problem.- Resources and Infrastructure for Structural Bioinformatics.

Notă biografică

Dr. Ying Xu is Regents-GRA Eminent Scholar and Professor at the University of Georgia.  Dr. Dong Xu is the Director of the Digital Biology Laboratory at the University of Missouri-Columbia.  Dr. Jie Liang is the Director for the Center for Bioinformatics at the University of Illinois at Chicago.

Textul de pe ultima copertă

Volume 2 of this two-volume sequence focuses on protein structure prediction and includes protein threading, De novo methods, applications to membrane proteins and protein complexes, structure-based drug design, as well as structure prediction as a systems problem. A series of appendices review the biological and chemical basics related to protein structure, computer science for structural informatics, and prerequisite mathematics and statistics.

Caracteristici

Presents a comprehensive overview of protein structure prediction methods Each chapter is a self contained review designed to cover (1) definition of the problem and an historical perspective, (2) mathematical or computational formulation of the problem, (3) computational methods and algorithms, (4) performance results, (5) existing software packages, and (6) strengths, pitfalls, challenges, and future research directions Covers topics from De novo methods of protein structure prediction to structure based drug design