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Genomics-Guided Natural Products Discovery: Methods in Enzymology, cartea 717

Douglas A Mitchell
en Limba Engleză Hardback – iul 2025
Genomics-Guided Natural Products Discovery, Volume 717 focuses on how the genomics revolution has catalyzed a resurgence of interest in natural products research. With the explosion of new sequencing data to analyze, “genome-mining” tools have grown in sophistication. Hence, this volume captures the utility of these tools, serving as a how-to guide to lower the entry barrier for newcomers. Topics covered in this new release include Merging RODEO with genomic enzymology workflows to guide RiPP discovery, Exploring Ribosomally Synthesized and Post-translationally Modified Peptides through SPECO-Based Genome Mining, Genome Mining for Natural Products Made by Multinuclear Iron-dependent Oxidation Enzymes (MNIOs), and much more.

Additional sections explore Genome-based discovery of polyketides generated by trans-acyltransferase polyketide synthases, Global genome mining in fungi using FunBGCe, Plant genome mining of burpitides from fused precursor peptides, Determining biosynthetic gene cluster boundaries thru comparative bioinformatics, Genome mining for bacterial terpenoids, Bioinformatics guided synthesis of natural product cyclic peptides, Overview of Genome Mining Strategies for Natural Products Discovery, and much more.

  • Provides a how-to guide for natural product genome-mining
  • Presents tools for mining specific natural product classes, such as RiPPs, NRPs, PKs, and terpenes
  • Includes methods for activation, uses of mass spectrometry, and boundary prediction for mining
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Specificații

ISBN-13: 9780443345272
ISBN-10: 0443345279
Pagini: 412
Dimensiuni: 152 x 229 mm
Editura: ELSEVIER SCIENCE
Seria Methods in Enzymology


Cuprins

1. Merging RODEO with genomic enzymology workflows to guide RiPP discovery
Graham Arthur Hudson
2. Exploring Ribosomally Synthesized and Post-translationally Modified Peptides through SPECO-Based Genome Mining
Yongxin LI
3. Genome Mining for Natural Products Made by Multinuclear Iron-dependent Oxidation Enzymes (MNIOs)
Wilfred van der Donk
4. Genome-based discovery of polyketides generated by trans-acyltransferase polyketide synthases
Piel Jörn
5. Global genome mining in fungi using FunBGCe
Yudai Matsuda
6. Plant genome mining of burpitides from fused precursor peptides
Roland Kersten, Lisa S. Mydy, Derrick A. Ousley and Xiaofeng Wang
7. Determining biosynthetic gene cluster boundaries thru comparative bioinformatics
Kou-San Ju
8. Genome mining for bacterial terpenoids
Jeffrey Rudolf
9. Bioinformatics guided synthesis of natural product cyclic peptides
Elizabeth Ivy Parkinson
10. Overview of Genome Mining Strategies for Natural Products Discovery
Marc Chevrette
11. TBD
Grace Kenney
12. Cyclophane-forming radical SAM enzymes: Heterologous expression and characterization of products
Brandon Morinaka
13. New algorithms for connecting mass spectrometry to genome mining
Hosein Mohimani
14. TBD
Hengqian Ren
15. Membrane vesicle activation of silent bacterial metabolites
Aya Yoshimura
16. TBD
Agarwal Vinayak
17. Mining Microbial Genomes with the antiSMASH Suite of Tools
Kai Blin