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User-Level Workflow Design: A Bioinformatics Perspective: Lecture Notes in Computer Science, cartea 8311

Autor Anna-Lena Lamprecht
en Limba Engleză Paperback – 10 dec 2013
The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.
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Specificații

ISBN-13: 9783642453885
ISBN-10: 3642453880
Pagini: 248
Ilustrații: XXII, 223 p. 84 illus.
Dimensiuni: 155 x 235 x 13 mm
Greutate: 0.35 kg
Ediția:2013
Editura: Springer Berlin, Heidelberg
Colecția Springer
Seriile Lecture Notes in Computer Science, Programming and Software Engineering

Locul publicării:Berlin, Heidelberg, Germany

Public țintă

Research

Cuprins

The Bio-jETI Framework.- Phylogenetic Analysis Workflows.- GeneFisher-P.- FiatFlux-P.- Microarray Data Analysis Pipelines.

Textul de pe ultima copertă

The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.

Caracteristici

The application of user-level workflow design makes the approach accessible to users with almost no programming expertise Describes four realistic application scenarios in bioinformatics Paves the way for a novel way of scientific workflow modeling based on jABC framework