R Markdown: The Definitive Guide de Yihui Xie

R Markdown: The Definitive Guide: Chapman &Hall/CRC The R Series

Autor Yihui Xie, J.J. Allaire, Garrett Grolemund

en Limba Engleză Paperback – 17 iul 2018

R Markdown: The Definitive Guide is the first official book authored by the core R Markdown developers that provides a comprehensive and accurate reference to the R Markdown ecosystem. With R Markdown, you can easily create reproducible data analysis reports, presentations, dashboards, interactive applications, books, dissertations, websites, and journal articles, while enjoying the simplicity of Markdown and the great power of R and other languages.
In this book, you will learn

Basics: Syntax of Markdown and R code chunks, how to generate figures and tables, and how to use other computing languages
Built-in output formats of R Markdown: PDF/HTML/Word/RTF/Markdown documents and ioslides/Slidy/Beamer/PowerPoint presentations
Extensions and applications: Dashboards, Tufte handouts, xaringan/reveal.js presentations, websites, books, journal articles, and interactive tutorials
Advanced topics: Parameterized reports, HTML widgets, document templates, custom output formats, and Shiny documents.

Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published three other books, Dynamic Documents with R and knitr, bookdown: Authoring Books and Technical Documents with R Markdown, and blogdown: Creating Websites with R Markdown.
J.J. Allaire is the founder of RStudio and the creator of the RStudio IDE. He is an author of several packages in the R Markdown ecosystem including rmarkdown, flexdashboard, learnr, and radix.
Garrett Grolemund is the co-author of R for Data Science and author of Hands-On Programming with R. He wrote the lubridate R package and works for RStudio as an advocate who trains engineers to do data science with R and the Tidyverse.

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Specificații

ISBN-13: 9781138359338
ISBN-10: 1138359335
Pagini: 338
Dimensiuni: 156 x 234 x 22 mm
Greutate: 0.63 kg
Ediția:1
Editura: CRC Press
Colecția Chapman and Hall/CRC
Seria Chapman &Hall/CRC The R Series

Cuprins

I Get Started
1.Installation
2. Basics
   Example applications
   Airbnb’s knowledge repository
   Homework assignments on RPubs
   Personalized mails
   Employer Health Benefits Survey
   Journal articles
   Dashboards at eelloo
   Books
   Websites
   Compile an R Markdown document
   Cheat sheets
   Output formats
   Markdown syntax
   Inline formatting
   Block-level elements
   Math expressions
   R code chunks and inline R code
   Figures
   Tables
   Other language engines
   Python
   Shell scripts
   SQL
   Rcpp
   Stan
   JavaScript and CSS
   Julia
   C and Fortran
   Interactive documents
   HTML widgets
Shiny documents
II Output Formats
3. Documents
   HTML document
   Table of contents
   Section numbering
   Tabbed sections
   Appearance and style
   Figure options
   Data frame printing
   Code folding
   MathJax equations
   Document dependencies
   Advanced customization
   Shared options
   HTML fragments
   Notebook
   Using Notebooks
   Saving and sharing
   Notebook format
   PDF document
   Table of contents
   Figure options
   Data frame printing
   Syntax highlighting
   LaTeX options
   LaTeX packages for citations
   Advanced customization
   Other features
   Word document
   Other features
   OpenDocument Text document
   Other features
   Rich Text Format document
   Other features
   Markdown document
   Markdown variants
   Other features
   R package vignette
4. Presentations
   ioslides presentation
   Display modes
   Incremental bullets
   Visual appearance
   Code highlighting
   Adding a logo
   Tables
   Advanced layout
   Text color
   Presenter mode
   Printing and PDF output
   Custom templates
   Other features
   Slidy presentation
   Display modes
   Text size
   Footer elements
   Other features
   Beamer presentation
   Themes
   Slide level
   Other features
   PowerPoint presentation
   Custom templates
   Other features
III Extensions
5. Dashboards
   Layout
   Row-based layouts
   Attributes on sections
   Multiple pages
   Story boards
   Components
   Value boxes
   Gauges
   Text annotations
   Navigation bar
   Shiny
   Getting started
   A Shiny dashboard example
   Input sidebar
   Learning more
6. Tufte Handouts
   Headings
   Figures
   Margin figures
   Arbitrary margin content
   Full-width figures
   Main column figures
   Sidenotes
   References
   Tables
   Block quotes
   Responsiveness
   Sans-serif fonts and epigraphs
   Customize CSS styles
7. xaringan Presentations
   Get started
   Keyboard shortcuts
   Slide formatting
   Slides and properties
   The title slide
   Content classes
   Incremental slides
   Presenter notes
   yolo: true
   Build and preview slides
   CSS and themes
   Some tips
   Autoplay slides
   Countdown timer
   Highlight code lines
   Working offline
   Macros
   Disadvantages
8. revealjs Presentations
   Display modes
   Appearance and style
   Smaller text
   Slide transitions
   Slide backgrounds
   -D presentations
   Custom CSS
   Slide IDs and classes
   Styling text spans
   revealjs options
   revealjs plugins
   Other features
9. Community Formats
   Lightweight Pretty HTML Documents
   Usage
   Package vignettes
   The rmdformats package
   Shower presentations
10. Websites
    Get started
    The directory structure
    Deployment
    Other site generators
    rmarkdown’s site generator
    A simple example
    Site authoring
    Common elements
    Site navigation
    HTML generation
    Site configuration
    Publishing websites
    Additional examples
    Custom site generators
11. HTML Documentation for R Packages
    Get started
    Components
    Home page
    Function reference
    Articles
    News
    Navigation bar
12. Books
    Get started
    Project structure
    Index file
    Rmd files
    _bookdownyml
    _outputyml
    Markdown extensions
    Number and reference equations
    Theorems and proofs
    Special headers
    Text references
    Cross referencing
    Output Formats
    HTML
    LaTeX/PDF
    E-books
    A single document
    Editing
    Build the book
    Preview a chapter
    Serve the book
    RStudio addins
    Publishing
    RStudio Connect
    Other services
    Publishers
13. Journals
    Get started
    Articles templates
    Using a template
    LaTeX content
    Linking with bookdown
    Contributing templates
14. Interactive Tutorials
    Get started
    Tutorial types
    Exercises
    Solutions
    Hints
    Quiz questions
    Videos
    Shiny components
    Navigation and progress tracking
IV Advanced Topics
15. Parameterized reports
    Declaring parameters
    Using parameters
    Knitting with parameters
    The Knit button
    Knit with custom parameters
    The interactive user interface
    Publishing
16. HTML Widgets
    Overview
    A widget example (sigmajs)
    File layout
    Dependencies
    R binding
    JavaScript binding
    Demo
    Creating your own widgets
    Requirements
    Scaffolding
    Other packages
    Widget sizing
    Specifying a sizing policy
    JavaScript resize method
    Advanced topics
    Data transformation
    Passing JavaScript functions
    Custom widget HTML
    Create a widget without an R package
17. Document Templates
    Template structure
    Supporting files
    Custom Pandoc templates
    Sharing your templates
18. Creating New Formats
    Deriving from built-in formats
    Fully custom formats
    Using a new format
19. Shiny Documents
    Getting started
    Deployment
    ShinyAppsio
    Shiny Server / RStudio Connect
    Embedded Shiny apps
    Inline applications
    External applications
    Shiny widgets
    The shinyApp() function
    Example: k-Means clustering
    Widget size and layout
    Multiple pages
    Delayed rendering
    Output arguments for render functions
    A caveat

Notă biografică

Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published three other books, Dynamic Documents with R and knitr, bookdown: Authoring Books and Technical Documents with R Markdown, and blogdown: Creating Websites with R Markdown.J.J. Allaire is the founder of RStudio and the creator of the RStudio IDE. He is an author of several packages in the R Markdown ecosystem including rmarkdown, flexdashboard, learnr, and radix.
Garrett Grolemund is the co-author of R for Data Science and author of Hands-On Programming with R. He wrote the lubridate R package and works for RStudio as an advocate who trains engineers to do data science with R and the Tidyverse.

Recenzii

"The manuscript offers a detailed documentation of the R Markdown document format and its related packages for R (e.g. knitr, rmarkdown, flexdashboard, shiny). These packages form an important ecosystem for reproducible research using R and are widely used across academia and the private sector. All the authors have been key contributors to developing the core R Markdown packages and are knowledgable about the inner workings of these functions and all the available options to customize published documents…The target audience for this manuscript would be experienced R users who frequently use R Markdown to generate publications for a variety of mediums (articles, books, information dashboards, interactive web applications, etc.)…While this book is strongly related to the author’s previous book (Dynamic Documents with R and knitr), a wider range of readers should find this new manuscript useful for its focus on the broad range of output formats generated by R Markdown and how to customize those outputs." ~Benjamin Soltoff, Department of Computational Social Science, University of Chicago
"A main strength of the software described herein is that it facilitates reproducible documents incorporating analyses and figures. The first topics covered in chapters 6-13 include handout and presentation formats that could be used effectively for teaching or presenting statistical results. The other topics focus on larger scale documents such as complex websites, books, and academic journal articles. From academic teaching and research to industry and other settings, the material covered by this book allows statisticians and data scientists to disseminate results in a highly effective manner." ~David Whitney, Department of Biostatistics, University of Washington
"This book will be a valuable reference for students, academics, and professionals using R – that is to say, any one in a wide (and growing) variety of fields focused on practical data analysis including statistics, machine learning, the social sciences, etc. There is increasing awareness that nearly any occasion calling for analysis code also calls for some amount of corresponding documentation, explanation, and/or interpretation. Rapid improvement in tools for R markdown has made integrating code and text less and less of a chore, and therefore more and more common – even among users new to R. R markdown is a popular choice now for a range of formats including blog posts, user manuals, books, dissertations, and undergraduate homework assignments. I personally use R markdown for nearly all of my website content, presentations, research papers, and to generate reports for the clients of my statistical consulting business. Because of its many applications, however, the ecosystem of R markdown tools has become unwieldy, and many tutorials reference outdated techniques or unnecessary workarounds. A definitive guide has been long needed." ~Rose Hartman, UnderstandingData
"This book is so far the most comprehensive reference for the R Markdown format and its associated extensions and tools. On a high level, Part I and II (Chapter 1-4) of this book cover the basic use of the R Markdown document and the knitr and rmarkdown packages, which are helpful for new users to quickly get started. Part III (Chapter 5-13) introduces a lot of new developments and powerful tools for R Markdown, including creating presentations, authoring books, building websites, writing journal articles, etc. In my personal point of view this is the most attractive part of this book, as it opens a new world for users who have only used R Markdown to create ordinary documents." ~Yixuan Qui, Department of Statistics, Purdue University
"This book represents a valuable contribution to the target field due to its exploration of a wide range of features in the markdown language. If other books on this topic exist, this one has the advantage that the authors have already made significant contributions to the markdown language in the R platform and certainly have a comprehensive understanding of the topic…I recommend this book for publication because the topic is sophisticated and complex, and the interested audience will certainly be satisfied with the clarity of presentation and the depth that the authors reach in their exploratory examples" ~Jon Katz, data analyst

Descriere

The rmarkdown package has steadily evolved into a relatively complete ecosystem for authoring documents. This book provides a definitive guide to this ecosystem.

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