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Coarse-Grained Modelling of DNA and DNA Self-Assembly: Springer Theses

Autor Thomas E. Ouldridge
en Limba Engleză Hardback – 7 iul 2012
This thesis presents a novel coarse-grained model of DNA, in which bases are represented as rigid nucleotides. The model is shown to quantitatively reproduce many phenomena, including elastic properties of the double-stranded state, hairpin formation in single strands and hybridization of pairs of strands to form duplexes, the first time such a wide range of properties has been captured by a coarse-grained model. The scope and potential of the model is demonstrated by simulating DNA tweezers, an iconic nanodevice, and a two-footed DNA walker — the first time that coarse-grained modelling has been applied to dynamic DNA nanotechnology.
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Specificații

ISBN-13: 9783642305160
ISBN-10: 3642305164
Pagini: 210
Ilustrații: XII, 176 p.
Dimensiuni: 155 x 235 x 18 mm
Greutate: 0.41 kg
Ediția:2012
Editura: Springer Berlin, Heidelberg
Colecția Springer
Seria Springer Theses

Locul publicării:Berlin, Heidelberg, Germany

Public țintă

Research

Cuprins

A Novel DNA Model.- Methods.- Finite Size Effects.- Structural and Mechanical Properties of Model DNA.- Thermodynamic Properties of Model DNA.- Modelling DNA Tweezers.- Modelling a DNA Walker.

Textul de pe ultima copertă

This thesis presents a novel coarse-grained model of DNA, in which bases are represented as rigid nucleotides. The model is shown to quantitatively reproduce many phenomena, including elastic properties of the double-stranded state, hairpin formation in single strands and hybridization of pairs of strands to form duplexes, the first time such a wide range of properties has been captured by a coarse-grained model. The scope and potential of the model is demonstrated by simulating DNA tweezers, an iconic nanodevice, and a two-footed DNA walker — the first time that coarse-grained modelling has been applied to dynamic DNA nanotechnology.

Caracteristici

Nominated as an outstanding contribution by the University of Oxford Presents a novel model with remarkable explanatory power Holds important potential for dynamic DNA nanotechnology Includes supplementary material: sn.pub/extras Includes supplementary material: sn.pub/extras