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Predicting the Lineage Choice of Hematopoietic Stem Cells: A Novel Approach Using Deep Neural Networks: BestMasters

Autor Manuel Kroiss
en Limba Engleză Paperback – 20 mai 2016
Manuel Kroiss examines the differentiation of hematopoietic stem cells using machine learning methods. This work is based on experiments focusing on the lineage choice of CMPs, the progenitors of HSCs, which either become MEP or GMP cells. The author presents a novel approach to distinguish MEP from GMP cells using machine learning on morphology features extracted from bright field images. He tests the performance of different models and focuses on Recurrent Neural Networks with the latest advances from the field of deep learning. Two different improvements to recurrent networks were tested: Long Short Term Memory (LSTM) cells that are able to remember information over long periods of time, and dropout regularization to prevent overfitting. With his method, Manuel Kroiss considerably outperforms standard machine learning methods without time information like Random Forests and Support Vector Machines.
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Specificații

ISBN-13: 9783658128784
ISBN-10: 365812878X
Pagini: 68
Ilustrații: XV, 68 p.
Dimensiuni: 148 x 210 x 5 mm
Greutate: 0.12 kg
Ediția:1st ed. 2016
Editura: Springer Fachmedien Wiesbaden
Colecția Springer Spektrum
Seria BestMasters

Locul publicării:Wiesbaden, Germany

Cuprins

Machine Learning – Deep Learning.- Training Neural Networks.- Recurrent Neural Networks.- Stem Cell Classification Using Microscopy Images.


Notă biografică

After finishing his MSc in Bioinformatics, Manuel Kroiss moved to London to work for a computer science company. In his work, the author is focusing on algorithmic problem solving while still remaining interested in applied machine learning.

Textul de pe ultima copertă

Manuel Kroiss examines the differentiation of hematopoietic stem cells using machine learning methods. This work is based on experiments focusing on the lineage choice of CMPs, the progenitors of HSCs, which either become MEP or GMP cells. The author presents a novel approach to distinguish MEP from GMP cells using machine learning on morphology features extracted from bright field images. He tests the performance of different models and focuses on Recurrent Neural Networks with the latest advances from the field of deep learning. Two different improvements to recurrent networks were tested: Long Short Term Memory (LSTM) cells that are able to remember information over long periods of time, and dropout regularization to prevent overfitting. With his method, Manuel Kroiss considerably outperforms standard machine learning methods without time information like Random Forests and Support Vector Machines.

Contents
  • Machine Learning – Deep Learning 
  • Training Neural Networks
  • Recurrent Neural Networks
  • Stem Cell Classification Using Microscopy Images
Target Groups 
  • Teachers and students in the field of computer science and applied machine learning
  • Executives and specialists in the field of neural networks and computational biology
About the Author
After finishing his MSc in Bioinformatics, Manuel Kroiss moved to London to work for a computer science company. In his work, the author is focusing on algorithmic problem solving while still remaining interested in applied machine learning.

Caracteristici

Publication in the Field of Organic Chemistry