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DNA-Protein Interactions: Principles and Protocols, Third Edition: Methods in Molecular Biology, cartea 543

Editat de Tom Moss, Benoît Leblanc
en Limba Engleză Paperback – 19 noi 2010
Gene expression can mean the difference between a functional and non-functional genome, between health and disease, and with the development of transgenic crops, the difference between survival and starvation. In DNA-Protein Interactions: Principles and Protocols, Third Edition, this vital subject is brought up to date with protocols exploring the most cutting-edge developments in the field, including in vivo and genome-wide interaction techniques. Addressing topics such as chromatin immunoprecipitation, topological studies, photocrosslinking, FRET and imaging techniques, the volume fully updates and expands upon the successful previous editions. Written in the convenient and informative Methods in Molecular Biology™ series format, chapters include introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.
Comprehensive and authoritative, DNA-Protein Interactions: Principles and Protocols, Third Edition serves as an ideal guide for all those exploring this dynamic, essential, and increasingly affordable area of research.
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Specificații

ISBN-13: 9781617378751
ISBN-10: 1617378755
Pagini: 700
Ilustrații: XVIII, 680 p. 131 illus.
Dimensiuni: 193 x 260 x 37 mm
Greutate: 1.47 kg
Ediția:Softcover reprint of hardcover 3rd ed. 2009
Editura: Humana Press Inc.
Colecția Humana
Seria Methods in Molecular Biology

Locul publicării:Totowa, NJ, United States

Public țintă

Research

Cuprins

Filter-Binding Assays.- Electrophoretic Mobility Shift Assays for the Analysis of DNA-Protein Interactions.- DNase I Footprinting.- Exonuclease III Footprinting on Immobilized DNA Templates.- Hydroxyl Radical Footprinting of Protein-DNA Complexes.- The Use of Diethyl Pyrocarbonate and Potassium Permanganate as Probes for Strand Separation and Structural Distortions in DNA.- Uranyl Photofootprinting.- Identification of Protein/DNA Contacts with Dimethyl Sulfate: Methylation Protection and Methylation Interference.- Ethylation Interference Footprinting of DNA-Protein Complexes.- Site-Directed Cleavage of DNA by Protein-Fe(II) EDTA Conjugates Within Model Chromatin Complexes.- Identification of Nucleic Acid High-Affinity Binding Sequences of Proteins by SELEX.- Identification of Sequence-Specific DNA-Binding Proteins by Southwestern Blotting.- Footprinting DNA-Protein Interactions in Native Polyacrylamide Gels by Chemical Nucleolytic Activity of 1,10-Phenanthroline-Copper.- Determination of a Transcription Factor-Binding Site by Nuclease Protection Footprinting onto Southwestern Blots.- Use of a Reporter Gene Assay in Yeast for Genetic Analysis of DNA-Protein Interactions.- Chromatin Immunoprecipitation in Mammalian Cells.- Sequential Chromatin Immunoprecipitation Protocol: ChIP-reChIP.- Profiling Genome-Wide Histone Modifications and Variants by ChIP-chip on Tiling Microarrays in S. cerevisiae.- Nucleosome Mapping.- In Cellulo DNA Analysis (LMPCR Footprinting).- Atomic Force Microscopy Imaging and Probing of DNA, Proteins, and Protein-DNA Complexes: Silatrane Surface Chemistry.- Two-Dimensional Crystallisation of Soluble Protein Complexes.- Assays for Transcription Factor Activity.- Ultraviolet Crosslinking of DNA-Protein Complexes via 8-Azidoadenine.- Static and KineticSite-Specific Protein-DNA Photocrosslinking: Analysis of Bacterial Transcription Initiation Complexes.- Use of Site-Specific Protein-DNA Photocrosslinking of Purified Complexes to Analyze the Topology of the RNA Polymerase II Transcription Initiation Complex.- Site-Directed DNA Crosslinking of Large Multisubunit Protein-DNA Complexes.- Functional Studies of DNA-Protein Interactions Using FRET Techniques.- Single-Molecule FRET Analysis of Protein-DNA Complexes.- Analysis of DNA Supercoiling Induced by DNA-Protein Interactions.- The Cruciform DNA Mobility Shift Assay: A Tool to Study Proteins that Recognize Bent DNA.- Plasmid Vectors for the Analysis of Protein-Induced DNA Bending.- Analysis of Distant Communication on Defined Chromatin Templates In Vitro.- A Competition Assay for DNA Binding Using the Fluorescent Probe ANS.- Fluorescence Spectroscopy and Anisotropy in the Analysis of DNA-Protein Interactions.- Circular Dichroism for the Analysis of Protein-DNA Interactions.- Defining the Thermodynamics of Protein/DNA Complexes and Their Components Using Micro-calorimetry.- Surface Plasmon Resonance Assays of DNA-Protein Interactions.

Recenzii

Reviews of Previous Editions:
"The book, written by an impressive list of worldwide contributors, will provide readers with nearly all the necessary tools for studying DNA-protein interactions, making it a perfect cell laboratory manual." -Quarterly Review of Biology

"...a great laboratory resource for biochemists and molecular, cellular, and developmental biologists." - Today's Life Science

Textul de pe ultima copertă

Gene expression can mean the difference between a functional and non-functional genome, between health and disease, and with the development of transgenic crops, the difference between survival and starvation. In DNA-Protein Interactions: Principles and Protocols, Third Edition, this vital subject is brought up to date with protocols exploring the most cutting-edge developments in the field, including in vivo and genome-wide interaction techniques. Addressing topics such as chromatin immunoprecipitation, topological studies, photocrosslinking, FRET and imaging techniques, the volume fully updates and expands upon the successful previous editions. Written in the convenient and informative Methods in Molecular Biology™ series format, chapters include introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.
Comprehensive and authoritative, DNA-Protein Interactions: Principles and Protocols, Third Edition serves as an ideal guide for all those exploring this dynamic, essential, and increasingly affordable area of research.

Caracteristici

Covers cutting edge techniques in chromatin studies, such as Nucleosome Mapping, Chromatin Immunoprecipitation and ChIP-on-chip Contains many protocols for large scale analysis of genome-protein interaction and long-distance interaction between chromatin domains Describes the use of many physical techniques like Atomic Force Microscopy, FRET, Surface Plasmon Resonance and Circular Dichroism Accessible and highly usable protocols for in vivo and in vitro Footprinting, Electromobility Shift Assays, and other proven DNA-protein interaction assays Offers authors' comments on delicate manipulations, information that rarely makes it into ordinary protocols